2020.11.15.
A "Biokompatibilis nano- és mezorendszerek tervezése és fejlesztése amiloid szálképzés alapján" című projekt eredményei a következő publikációkban jelentek meg:
- C. Fábri, R. Marquardt, A. G. Császár, M. Quack, Controlling Tunneling in Ammonia Isotopomers, J. Chem. Phys. 2019, 150, 014102 (Editor’s pick). https://doi.org/10.1063/1.5063470
- J. Šmydke, C. Fábri, J. Sarka, A. G. Császár, Rovibrational Quantum Dynamics of the Vinyl Radical and its Deuterated Isotopologues, Phys. Chem. Chem. Phys. (Challenges in spectroscopy: Accuracy versus interpretation from isolated molecules to condensed phases Themed Issue) 2019, 21, 3453-3472.
- M. P. Metz, K. Szalewicz, J. Sarka, R. Tóbiás, A. G. Császár, E. Mátyus, Molecular dimers of methane clathrates: ab initio potential energy surfaces and variational vibrational states, Phys. Chem. Chem. Phys. 2019, 21, 13504-13525.
- Simkó, T. Szidarovszky, A. G. Császár, Toward Automated Variational Computation of Rovibrational Resonances, Including a Case Study of the H2 Dimer, J. Chem. Theory Comput. 2019, 15, 4156-4169. https://pubs.acs.org/doi/10.1021/acs.jctc.9b00314
- A. G. Császár, C. Fábri, J. Sarka, Quasistructural molecules, WIREs CMS, 2019, e1432. https://doi.org/10.1002/wcms.1432
- R. Tóbiás, T. Furtenbacher, J. Tennyson, and A. G. Császár, Accurate Empirical Rovibrational Energies and Transitions of H216O, Phys. Chem. Chem. Phys. (Challenges in spectroscopy: Accuracy versus interpretation from isolated molecules to condensed phases Themed Issue) 2019, 21, 3473-3495.
- Máté Fellner, Bálint Varga, Vince Grolmusz: The Frequent Subgraphs of the Connectome of the Human Brain, Cognitive Neurodynamics Vol. 13, No. 5, pp. 453-460 (2019) https://doi.org/10.1007 /s11571-019-09535-y https://rdcu.be/bAHoe [impact factor 3.021]
- Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz: High-Resolution Directed Human Connectomes and the Consensus Connectome Dynamics, PLOS ONE, Vol. 14 No. 4,: e0215473 (2019) https://doi.org/10.1371/journal.pone.0215473 [ impact factor 2.776]
- Balázs Szalkai, Bálint Varga, Vince Grolmusz: Comparing Advanced Graph-Theoretical Parameters of the Connectomes of the Lobes of the Human Brain, Cognitive Neurodynamics, Vol. 12, No. 6, pages 549-559 (2018), https://doi.org/10.1007/s11571-018-9508-y https://rdcu.be/8Gwh . [ impact factor 3.021]
- Kristóf Takács, Bálint Varga, Vince Grolmusz: PDB_Amyloid: An Extended Live Amyloid Structure List from the PDB, FEBS Open Bio, Vol. 9, No. 1. pp. 185-190, 2019. https://doi.org/10.1002/2211-5463.12524 [impact factor 2.101]
- Balázs Szalkai, Bálint Varga, Vince Grolmusz: Mapping Correlations of Psychological and Connectomical Properties of the Dataset of the Human Connectome Project with the Maximum Spanning Tree Method, Brain Imaging and Behavior Vol. 13, No. 5, pp. 1185-1192 (2019), https://doi.org/10.1007/s11682-018-9937-6 , also available freely at this link. [impact factor 3.719]
- Balázs Szalkai, Vince Grolmusz: MetaHMM: A Webserver for Identifying Novel Genes with Specified Functions in Metagenomic Samples; Genomics, Vol. 111, No. 4, pp. 883-885, (2019) https://doi.org/10.1016/j.ygeno.2018.05.016 [impact factor 3.16]
- Balázs Szalkai, Vince Grolmusz: Human Sexual Dimorphism of the Relative Cerebral Area Volumes in the Data of the Human Connectome Project; European Journal of Anatomy, Vol. 22, No. 3. pp. 221-225 (2018)
- É. Kiss,·G. Gyulai, E. Pári, K. Horváti, Sz. Bősze: Membrane affinity and fluorescent labelling: comparative study of monolayer interaction, cellular uptake and cytotoxicity profile of carboxyfluorescein‑conjugated cationic peptides Amino Acids 50, (11) 1557–1571 2018 DOI 10.1007/s00726-018-2630-7
- KISS Éva, GYULAI Gergõ, ÁBRAHÁM Ágnes, PÁRI Edit, MASSIGNAN Flavio: Biokompatibilitás és membránaffinitás, határfelületi kölcsönhatások tanulmányozása modell rendszereken Magyar Kémiai Folyóirat 125 (1) 19-24 2019. DOI: 10.24100/MKF.2019.01.19
- N. Zs. Nagy, Z. Varga, J. Mihály, Gy. Kasza, B. Iván, É. Kiss: Highly efficient encapsulation of curcumin into and pH-controlled drug release from poly(ε-caprolactone) nanoparticles stabilized with a novel amphiphilic hyperbranched polyglycerol Express Polymer Letters 14 (1) 90-101 2020 DOI: 10.3144/expresspolymlett.2020.8
- Boros, Eszter; Sebák, Fanni; Héja, Dávid; Szakács, Dávid; Zboray, Katalin; Schlosser, Gitt ; Micsonai, András; Kardos, József; Bodor, Andrea; Pál, Gábor Directed Evolution of Canonical Loops and Their Swapping between Unrelated Serine Proteinase Inhibitors Disprove the Interscaffolding Additivity Model JOURNAL OF MOLECULAR BIOLOGY 431 : 3 pp. 557-575., 19 p. (2019)
- Szakács, Dávid ; Kocsis, Andrea ; Szász, Róbert ; Gál, Péter ; Pál, Gábor Novel MASP-2 inhibitors developed via directed evolution of human TFPI1 are potent lectin pathway inhibitors JOURNAL OF BIOLOGICAL CHEMISTRY 294 : 20 pp. 8227-8237., 11 p. (2019)
- Sturm Á, Saskői É, Kovács T, Weinhardt N, Vellai T. Highly efficient RNAi and Cas9-based auto-cloning systems for C. elegans research. Nucleic Acids Res. 46(17):e105 (2018). doi: 10.1093/nar/gky516.
- Barna J, Csermely P, Vellai T. Roles of heat shock factor 1 beyond the heat shock response. Cell Mol Life Sci. 75(16):2897-2916 (2018). doi: 10.1007/s00018-018-2836-6.
- Kosztelnik M, Kurucz A, Papp D, Jones E, Sigmond T, Barna J, Traka MH, Lorincz T, Szarka A, Banhegyi G, Vellai T, Korcsmaros T, Kapuy O. Suppression of AMPK/aak-2 by NRF2/SKN-1 down-regulates autophagy during prolonged oxidative stress. FASEB J. 33(2):2372-2387 (2019). doi: 10.1096/fj.201800565RR.
- Kerepesi C, Daróczy B, Sturm Á, Vellai T, Benczúr A. Prediction and characterization of human ageing-related proteins by using machine learning. Sci Rep. 8(1):4094 (2018). doi: 10.1038/s41598-018-22240-w.
- Kapuy O, Papp D, Vellai T, Bánhegyi G, Korcsmáros T. Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress Response. Antioxidants (Basel). 7(3). pii: E39 (2018). doi: 10.3390/antiox7030039.
- Kovács D, Sigmond T, Hotzi B, Bohár B, Fazekas D, Deák V, Vellai T, Barna J. HSF1Base: a comprehensive database of HSF1 (heat shock factor 1) target genes. Int J Mol Sciences. In press (2019).
- Dániel Horváth, Dóra K. Menyhárd, András Perczel: Protein Aggregation in a Nutshell: The Splendid Molecular Architecture of the Dreaded Amyloid Fibrils. Curr Protein Pept Sci ; 20(11): 1077-1088, (2019)
- Nóra Taricska, Dániel Horváth, Dóra K. Menyhárd, Hanna Ákontz-Kiss, Masahiro Noji, Masatomo So, Yuji Goto, Toshimichi Fujiwara, András Perczel: The route from the folded to the amyloid state: exploring the potential energy surface of a drug-like miniprotein. Chemistry A European Journal doi.org/10.1002/chem.201903826 (2019)
- Dániel Horváth, Nóra Taricska, Ernő Keszei, Pál Stráner, Viktor Farkas, Gábor K. Tóth, András Perczel: Compactness of Protein Folds Alters Disulfide‐Bond Reducibility by Three Orders of Magnitude: A Comprehensive Kinetic Case Study on the Reduction of Differently Sized Tryptophan Cage Model Proteins. ChemBioChem 1-16 | doi.org/10.1002/cbic.201900470 (2019)
- https://pitgroup.org/publications/
Bírálat/revízió alatt lévő kéziratok:
- Sturm Á, Saskői É, Hotzi B, Tarnóci A, Barna J, Bodnár J, Perczel A, Ivics Z, Vellai T. Downregulation of transposable elements extends lifespan in Caenorhabditis elegans. Nat Commun. Under revision (2019).
- Manzéger A, Tagscherer K, Lőrincz P, Szaker H, Lukácsovich T, Pilz P, Kméczik R, Csikós G, Sass M, Kovács T, Vellai T, Billes VA. Condition-dependent functional shift of two Drosophila Mtmr lipid phosphatases in autophagy control. J Cell Biol. Under review (2019).
- Kovács T, Szinyákovics J, Billes VA, Murányi G, Bjelik A, Légrádi Á, Szabó M, Sándor S, Kubinyi E, Paracky P, Lőke J, Mulder J, Gulyás B, Gulya K, Maglóczky Z, Vellai T. EDTP/MTMR14 lipid phosphatases promote brain aging by progressively downregulating autophagy throughout adulthood. Proc Natl Acad Sci USA. Under review (2019).
Technical Reports:
- Máté Fellner, Bálint Varga, Vince Grolmusz: The Frequent Complete Subgraphs in the Human Connectome, arXiv preprint arXiv:1903.05979
- Máté Fellner, Bálint Varga, Vince Grolmusz: The Frequent Network Neighborhood Mapping of the Human Hippocampus Shows Much More Frequent Neighbor Sets in Males Than in Females, arXiv preprint arXiv:1811.07423 (2018)
Konferencia közlemények:
- Máté Fellner, Bálint Varga, Vince Grolmusz, “The Frequent Complete Subgraphs in the Human Connectome”, In: Rojas I., Joya G., Catala A. (eds) Advances in Computational Intelligence. IWANN 2019. Lecture Notes in Computer Science, vol 11507. pp. 908-920, Springe
- Takacs, K., B. Varga, and V. Grolmusz. “An automatically refreshed public list of amyloid and pre-amyloid structures from the PDB.” FEBS OPEN BIO. Vol. 8. 111 RIVER ST, HOBOKEN 07030-5774, NJ USA: WILEY, 2018.
- Grolmusz, Vince, Kristof Takacs, and Balint Varga. “Amyloids and pre-amyloids from the PDB.” FASEB JOURNAL. Vol. 32. No. 1. 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA: FEDERATION AMER SOC EXP BIOL, 2018.